Could you please make that remove tag confirmation dialog shows which particular tag types are going to be removed?
So instead of just "Do you really want to remove the tags of the selected files?" it would say something like "Do you really want to remove ID3v1, APEv2 tags of the selected files?"
As a final confirmation that tag removal options are set correctly.
(I'm still in favour of solution to make them easily visible and changeable on the main window)