So I understand you right that i.e. you want all mp3-files in the folder "music 1" to have the file 1.jpg in the folder "covers" embedded?
This should work:
Your Cover folder i.e. is d:\covers
Load all mp3-files from the mp3-folder including the subfolders to Mp3Tag.
Mark all files and define an action.
Action-type: Import Cover from file
Format string for image filename:
d:\covers$trim($right(%_directory%,2)).jpg